Scaffold Ga0209336_10024628

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10024628
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2091
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091971	Metagenome	107	N
F096206	Metagenome	105	N
F103914	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_100246283	F103914	AGGAGG	MYTADRTDLLDALASSMRDCIETEISSTDFTLEEYFRCSLIDRGVASTRSEMIARRMAEGNLEGLAYHVASCDPHYLKKLIQAEPRLIHMLLQNNKMSDLDVKIVEEEVIK
Ga0209336_100246284	F096206	GGGGG	MSFTVDFGNIRETDKESRENLNGLQYWIGSYMMAIGMDEITEKNYLEVYARLRMLDTSILALGNDGDGEPWMNIDMLQRLIGAKFWGRHINVESRTKFSSRMLRNTIKAVEKKVTEVSEEVA
Ga0209336_100246285	F091971	AGGCGG	LRACKLEKVMDKLNQLFEPSKQVGSDKKYRHIVKDQMIQGDELEVNGVRRSFWSNPNGTHSCHMWNVDKGKVIEQLTVDSLEGEDLQAFQLRTQDILWGV