Scaffold Ga0209336_10020521

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10020521
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2363
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F031261	Metagenome	183	Y
F068823	Metagenome	124	N
F094102	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_100205211	F068823	N/A	TYNEYYFEKEDVEATLDKIGLLTRLLGIVYKEQGLDTIKYLVERNSNRKYNWLDDEMMEDIINTLEDKEYE
Ga0209336_1002052110	F094102	GAG	MKDTVLTPMNKEEYRVWENYVIKYNEDNPTNQIAYEVNWKDNIYKVKLLSLKIDNEGQE
Ga0209336_100205212	F031261	GGAGG	MNRTRTYVMSVEKNSPEVLEQLNKLQEVRQGVRLLNRHSRRKHYVKCQGRWGRNNPDYNQRMIPFCPLDKAVKWDVYIYEK
Ga0209336_100205213	F010318	GAG	MNVDSDKPRYLECIYEAPITFDLEELGIDWDKVKDYHVKWGTLYVEFKDGTSEQHEGSQGETDWKWSAKENILTEGWSLVEGLN
Ga0209336_100205215	F010532	GAGG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWEKPTDVSDVDVIHRIEEHLSYMVSSYLNKSYEGISVD