Scaffold Ga0209336_10020295

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10020295
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2381
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020913	Metagenome / Metatranscriptome	221	N
F023859	Metagenome / Metatranscriptome	208	N
F081365	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_100202951	F081365	AGGTGG	MVGIIGTVVNIVGGDMPDQVNKNNRRLFVEDEYDLYDIRKARPFWHDVCEVNGWEIVKDEEDFKEDYVCKINNELYFMELQVVGYWHNFDLSNISNVRISASKV
Ga0209336_100202954	F023859	AGGA	MKKVIVKFIGVKKYLVSDNADPEKIKSMFRKDLELLPPVWANNIEAVMYAKDVPEEEE
Ga0209336_100202955	F020913	GAGG	MLGIFGRNKPLSVLEDLQLDYNPSEFRKVQYVLELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEVCNCANKQYAKLKKNGSPFMHKAYIKDWAL