Scaffold Ga0209336_10019541

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10019541
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2443
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009463	Metagenome / Metatranscriptome	317	Y
F012129	Metagenome / Metatranscriptome	283	Y
F013249	Metagenome / Metatranscriptome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_100195412	F009463	N/A	MDKLQLTDILEEDYSKDVNITNDTSMYDPLHEDGDDQQGMLKYTTTIDGRRYKVSFDVNKNPTKKGIKVKFFPLDDSGSEIENPSPEQLAQLQNDVATKLAPKFNDFRLEFDEDEDAPEKNVAAFQVPLSSFVSFVANVVFK
Ga0209336_100195413	F013249	N/A	MGKRKLLNLRVIGHSPKLLTRFIDQNKHHIFKEAFNGIKHAIRQNKDTAEICSINNDIAIATIAKKDWENALSSSLGYFESQDEYEVCGDINYTIKLLRNVKRSIKQPKTISGSAITS
Ga0209336_100195414	F012129	N/A	MSKDPLNNLKQSLDQLLQADTSVKRKNKKVYDQKKELFINLINQFETSITRSYLIEKDFKIDLSKYEENFYQVIDSLILLAFGKEIYEILSFYFYDRYNPDGSKNTLVIEQTGEEIQINNVDDLFQVINNINPNLFNAKR