Scaffold Ga0209336_10016793

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10016793
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2705
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009070	Metagenome	323	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_100167932	F009070	AGGAG	MRLAIVIDLDGDIMYAPEDSRVFENYPKPKLFDNLKDAQEECAKWNTGIIVDFDNNNKTVPIVRSFDEEERRRSMEREEMNRDDGTSTTKDATQ
Ga0209336_100167936	F027536	AGGAGG	MLISKVLPIDRVINECKRRADDAWWDGKDEEAKLHEAEAKFYEDDKDKGVLWCPNF
Ga0209336_100167937	F029123	N/A	EVWFGKDGKWFGYHSFKYRMEAVDCELKYLNIFKDLTVEIRRREHNAY