Scaffold Ga0209336_10015111

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10015111
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2898
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F015102	Metagenome / Metatranscriptome	257	Y
F029123	Metagenome	189	Y
F029594	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1001511111	F029594	AGGAG	MLPDEMEAEKNRKMLLAQADEIEILQRNVRDLQGQLNVAHIRIAELKKDEV
Ga0209336_100151113	F015102	GGA	MESDDDAEDTNTPFDDVTHWVGNLPRKGTDSDERTNKRNTRGKTKSNFLRKKLGLEEK
Ga0209336_100151116	F029123	AGGAG	MSYEVWFGKNGKWFGYHSFKHRMDAVRYELRYQNVFKDLTVEIRRREHASQ
Ga0209336_100151117	F006217	AGGAGG	MIELLLSVVEDTNQIHKYCMSKHDHWTGRAACVQELRHAQRKMEVEDLREFLKANPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGTDKVKKEKC
Ga0209336_100151119	F005813	GGAGG	MKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPNHEAMSWFRWAFDCMLRGQYKDAEAMLYKGLKDDHSTQDGG