NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10012493

Scaffold Ga0209336_10012493


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10012493 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3285
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020913Metagenome / Metatranscriptome221N
F081365Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209336_100124931F081365AGGALQEKLLRVGIVGVMKLNQVNKNNRRLFVEDEYDLYDVRKARPFWNDVCEVNGWEIVKDEEDFKEDYVCQIDNELYFMELQVVGYWHNFDLSNISNVRISASKV
Ga0209336_100124938F020913GAGGMLGVFGRNKPLSVLENIQLDYNPSEFRKVQYVLELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEDCNCSNKQYAKLKKDGSPFVHRAYIKDWAL

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