Scaffold Ga0209336_10011971

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209336_10011971

Scaffold Ga0209336_10011971

Overview

Basic Information
Taxon OID	3300025137 Open in IMG/M
Scaffold ID	Ga0209336_10011971 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3378
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036426	Metagenome / Metatranscriptome	170	Y
F098062	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1001197110	F098062	AGGA	MSTQKEIYGQTKNSVIAQFKKLKPLYAGKSNLIIMRVLSDAQMMMDAKKYKTANQFINIAKLLLSTKCK
Ga0209336_100119718	F036426	AGGA	MKTITILIAMLFSTVAFANDYAPERVDRINLYPVTSDNENAPKYSGYYKDSNGEVHQVAVWAVSDKYLEGSVTPIESN

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