Scaffold Ga0209336_10003693

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10003693
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7052
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006530	Metagenome	371	Y
F021866	Metagenome	217	Y
F029593	Metagenome	188	N
F071653	Metagenome	122	Y
F100994	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_100036932	F006530	GGAG	MRLIDRIIKRFEEEAVEFASAGMEEEAKDARRLASKYTEMKYNGHTHSLRMEINDKWKKK
Ga0209336_1000369321	F029593	GAGG	MFKVSIIDFRLQRVADLGNSQFWAMDRATMPPSNKNRSEVKGARSKKKEIPLQALYLKCQAIWDFSHFILFPFIGDFNSIKRGIPFNKMNRSGKPLATLFSIFWKKEFLGSAFFISLPSVFSVDIVYGKK
Ga0209336_100036933	F100994	GGAG	MKLETRKQVREATAKKRYPRYDTQYMNYNEADSYYIEVYTNVKRVIKLEARTEEEAIKKALKREERRKTRNCYEFVDCDYNIVEKKEYEAYRQNNQEVRRGSS
Ga0209336_100036935	F021866	AGGAG	MEEIHLQETQLEYEPIHRTDIPWQQAVQKIETVLNDVCREYEKDGHPYYADVLRVHWRRILKG
Ga0209336_100036938	F071653	AGGGGG	MDKEVEEYIKDIPTDTILIEVQGGHVTEVHNDSNGYMLFDWDSLGEQDLHEFSQKVLKRLLER