Scaffold Ga0209336

Basic Information
Taxon OID	3300025137 Open in IMG/M
Scaffold ID	Ga0209336_10002169 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025137 Open in IMG/M

Scaffold ID

Ga0209336_10002169 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9361
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (34.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9361

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (34.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.2833

Long. (^o)

-134.6666

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006322	Metagenome / Metatranscriptome	376	Y
F010877	Metagenome / Metatranscriptome	298	Y
F026712	Metagenome / Metatranscriptome	197	Y
F030556	Metagenome / Metatranscriptome	185	Y
F050369	Metagenome / Metatranscriptome	145	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000216910	F026712	N/A	MKQTFYPTDSEQQFLMDIVINEFANRHLPMDNYNVQEVAYRQAISDGAMRTDNYFNN
Ga0209336_1000216916	F077286	GAG	MSKLRYTVEWEGDVTNYKQDFETLEEARIAMIMHHKRNAVIKVRRIDEYKG
Ga0209336_1000216918	F050369	N/A	MKITERDLRNWFPADRRFLHFCAKYYGYSFHNDEVVERASHLAVLNVMRLVNRDEEFENEAHMTGIVMSSFRYAILNAYTNSLSANEKNLDVRNESEVTYGDGDDEYSKYKANAIADTKEIDNLIDVVRDYAETNLPYLQRRALIECVIGESSMKELATETDTSVRKVQLAKQKAVRRIKKFIAVLNENEEKYGKKEANGKYLSPSRSKLQIAIQLEPVRRDETRERNHSKAMSFVNTPPKV
Ga0209336_100021692	F006322	AGGA	MPAKRNKKGDVVSGRGSELTTLQSDFLEGIRNEGMDASSKIAKSLGYTNYYRDRRTNGTAFHKELMAIANAEMKSIEAAKGTNLSALIKIRDIALANDDMKAAMEAIKIINDMQGYKAPTKVEQTKIDITATIDLTAPTDEQDYLDIDAD
Ga0209336_1000216923	F030556	N/A	MANDKVFVGKTSVITTKFGEIVKVALGPQDFEVLTNNKNEKGWVNLEIKDKRDGGKYIQLQGEYTGKPKAAAVNDTDDMPF
Ga0209336_100021694	F010877	N/A	MSAKELLIALLSVTMPKGDIKSEMFKFYNSMVGKSKYFPRKENPKTACGSCIQRVKTSIWKWYHSDETAPSFSELTFTGRLGAHNIPLYTYNKNNGKEDSSNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209336_10002169

Overview

Ecosystem & Geography

Associated Families

Sequences