Scaffold Ga0209336

Basic Information
Taxon OID	3300025137 Open in IMG/M
Scaffold ID	Ga0209336_10001093 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025137 Open in IMG/M

Scaffold ID

Ga0209336_10001093 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13291
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (60.61%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13291

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (60.61%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.2833

Long. (^o)

-134.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012834	Metagenome	277	Y
F015946	Metagenome	251	Y
F027349	Metagenome	195	N
F043684	Metagenome	156	N
F044199	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000109313	F012834	N/A	MEERFTDLAWTEGDFNKATTSPSQTALSNWMWYNKYQLFPYLKFKQEKPSISFKAGTFVHDWFQNILVGQAKIDDVEFAFKTHIEQFEFEEKHKMKAQFILKKIKGYVERHLEAINEVSDNFSGWSSEKPFSNWYDDKYMGQTLNLANEGFIDCVNDNEKKITEHKNRFGSVKKYPLKKPKKDDKPNENRIGDWVYSKSQAIKYPQFTHCIQTAIYSKHFDYKYKPYLIYVGDNDYTIFTPDNCWELTPKGLQYFFKKFIQINIQRQEMLRMANGDMRKLAMIIGVDWSEIRNYKSNFLLENYHEEDMQRLEDFYEKL
Ga0209336_1000109314	F043684	N/A	MTVEKVNLNWEEILSSASTGIVREVESLRQNIKWGHGAKFDRYQKWGQTVSGTMCEMALAKKMKSYFTHSVNNFHGKDLIIDNKPVQVRSQLYSKPNKSLIIRQGHKPEDYYFYVGDDCPTFYFYGYILAKDCRKYGKWTDFNQDRPHVWSVPIESLKPITEFINET
Ga0209336_1000109319	F027349	GAGG	MKVWNIRVTDRNGFDSYSFFQEDQPTNQQLEAIKKIYQNSGRYFPEDIEDIEVEIKSNFDNQNIPTYDQLIDHLKDKYRTIK
Ga0209336_1000109326	F015946	AGG	MENKFKIVDWMNNRIFPDKAFTSFEHGWEYIYSKFDNEEDHQEYYVVDINQKERGQI
Ga0209336_1000109327	F044199	AGG	MTYKDIIKMINDAYSSLRILNNIDWKAYRDEIYKLERQYEKNHRQYCDGRKYDFSVDIASKLFVVQHIASALKGTRHDIKSYLFLKKSIFLAESLVINYEDKIKEALKDFDLNKLCNLDYTILTEKKVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209336_10001093

Overview

Ecosystem & Geography

Associated Families

Sequences