Scaffold Ga0209336

Basic Information
Taxon OID	3300025137 Open in IMG/M
Scaffold ID	Ga0209336_10000715 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025137 Open in IMG/M

Scaffold ID

Ga0209336_10000715 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16766
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (11.76%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16766

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (11.76%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.2833

Long. (^o)

-134.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014147	Metagenome / Metatranscriptome	265	N
F021987	Metagenome / Metatranscriptome	216	N
F051922	Metagenome / Metatranscriptome	143	N
F065800	Metagenome / Metatranscriptome	127	N
F070126	Metagenome / Metatranscriptome	123	N
F080086	Metagenome / Metatranscriptome	115	N
F084839	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000071519	F021987	N/A	MNKTSTQIKDQLVRKGASEVIEEALKAGVFFSDIDEMDEWIKDEFDYNMLGHTDNDYDEVMNIMMEEVHDRVYEFFNQVQADILHKAFLVQKSLEHDTDL
Ga0209336_1000071524	F065800	N/A	METKFIPTNPEELASFDSVLKEFNTINDSAYVFTNSYDSNYDVYVGSESTADGYEIWIINVDNEGPIISENVYYYEPRAYDIFNHIGGGWRDDLIVYSELGLDEIEEYMIGELCTNYDNYLNELEDAE
Ga0209336_1000071525	F051922	N/A	MKRLSLYERLNPDVKAKLIANQLDYEFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPTDTSTMLRGDSNLIQPQNEVI
Ga0209336_1000071526	F014147	N/A	MTTIKNTFEQQLHEKFGVNVMSMEGIHSAILVDGAHGTDYISYHDTSPDWVFGVHPKLQAFIDAHGWECEWQNSEVLNLYPGHDWTGDFSEAQLVSHWNAMCDHITAPQDHIYCNDDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYGNPMSFNSLLNYIDVPELEEHLIAHALI
Ga0209336_1000071530	F080086	N/A	MTNITAMEVSIEALANECAQHDFAFMENPWRQRHWSNEYDRRARIFTMLERLGHSSKAIEVYNTYAPAFAKRPLRSKYY
Ga0209336_1000071532	F070126	N/A	MNLQELYTYCRGVIEKYPALRDDVMRHFALAEMECEDDASSEEHEVELSLTDIDDLVADHEMQMGLQK
Ga0209336_1000071533	F084839	AGG	MNRPYKYITVLDYSNGQVYLYDYDATEMPNAADFVKSRHDLDDVNYMVHQYTPALWTKDVYYCTREQAYELTNED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209336_10000715

Overview

Ecosystem & Geography

Associated Families

Sequences