Scaffold Ga0209336

Basic Information
Taxon OID	3300025137 Open in IMG/M
Scaffold ID	Ga0209336_10000619 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025137 Open in IMG/M

Scaffold ID

Ga0209336_10000619 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18089
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (32.35%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18089

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (32.35%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.2833

Long. (^o)

-134.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005706	Metagenome / Metatranscriptome	392	N
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000061910	F043411	AGAAG	MLKRRLTYNNKRVYIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVEFK
Ga0209336_1000061914	F056150	N/A	MDRKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLKKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLINSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS
Ga0209336_1000061920	F038672	N/A	MDELDVMLRKNKLDIMIIKASAEVKKTNNKVKQEGLEVLMDILELIHDLQHEIRQNYKDISKLKYENAVAYKENAILKADFSTYKHNLKKAELESNKNG
Ga0209336_1000061923	F005706	N/A	VKESRVLKALGLSSLDIQNMLMNGMTMPEIAKKYKITYISLVQAFNIQKKDFKYIDYIQPKKEVEDIKPVSFTFDRLYSEESLNENELLAFYKYEQKNKAYFEQRTTLF
Ga0209336_100006195	F020903	N/A	MSQQLDIFGFDADQLEEVKIDNPTTLSQVFNNIAADMVYCLQQSVQKEGLVYKGSLQKSIRMPVKMFGFRMVATLYLADYYDYLNQGVKGIGGVRKSGDRKGQPWEIKAPNSPYQFKKGPKVSHVRQWAKSKGLNEYAVRNSIAKTGIRPRYFFDNCMQETFYGQAFDKFKTEIRIVSGERIAKGLKEILKK
Ga0209336_100006196	F029278	N/A	MEITIPTKWEDVTIGNYINLRPVLNSKLNPIERVVNILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPKQLKDKRFKIGGQWYEFKVDAKKLLFGEYINSMEILQNAQDNEEAIFNNLHHILTTICRPVKKTLFGWKHINVDSEILRKTADNFLNNMPMTIAYPIGVFFYTHSEDLTKAIKTCLIKQAEKMTKEAREELDLVNAGDGGTP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209336_10000619

Overview

Ecosystem & Geography

Associated Families

Sequences