Scaffold Ga0209336_10000506

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10000506
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19982
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015795	Metagenome	252	Y
F016204	Metagenome	249	Y
F036469	Metagenome	170	Y
F038854	Metagenome / Metatranscriptome	165	Y
F102056	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000050611	F015795	AGGAG	MGETNNLYMMMRLSYEQAVDDYNNKKAHSLLGAYQKYYKINVGMTCLNPQGDLINFYDEDNNLECPI
Ga0209336_100005062	F036469	AGGAG	MSTYYRPTEPIPLQKIKDSKFLQDHEFEVVEDENGTYFTCSESCIHFATDDKNNVIDLFRYGANNSEHIITPLRYEFEVDFVSEHDDDYDDYASDDTGVMTINITDLIELSKEKN
Ga0209336_100005064	F038854	AGGAGG	MDNPRRIVSTTILVEWSDNPKSVVLDNDMPNGLANDFDEWLTEIEEEEVSNERRI
Ga0209336_100005065	F102056	AGGAGG	MNEEFEKDLVKLLNKYYSTNWDYVWEFEADSIVTKLWLGEEVSDVS
Ga0209336_100005066	F016204	AGGAG	MSVNEQYVNVLDIKFYVCDEDGNEVLNKDGTVKEFYFKGRLKPLEYLCEDMTVEDLEEVKDVSTSS