Scaffold Ga0209336_10000170

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10000170
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33254
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (91.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025990	Metagenome / Metatranscriptome	199	Y
F038680	Metagenome	165	N
F043915	Metagenome / Metatranscriptome	155	N
F069472	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000017015	F069472	AGGAG	MSDSYSYDIDVTDPNELDPIDLMIKDLVDYKLNACSVQELLAMAASWMTQDLENKSLSAVQAIHNDLFARQEELH
Ga0209336_1000017019	F038680	AGGA	MRDLPTENEIKESITDCNTWYRRFFRCWIDGSYLGFEHYQDNCDKVRRDYNSDKALRALAINSFCEFVAHEENCSPRTVQRHMVKTVSRDDLEALNVELTDDLRDLVRDDMEQTA
Ga0209336_100001702	F043915	GGAG	MSNVIHLLPTQASADEVLEDCKGEFAHVLVIGWTPDDALTAKSTTSMDMKEIIYLLEVFKHAIITAGHEVE
Ga0209336_100001704	F025990	GAG	MTEEHPVYRAQFYIQELKKYTTWTDYLAYYKEQDDKIMQFSNYCMQMWSSYMNDKIKQQQAPLSYKEYLKKYKELLEEGYSDRPKD