Scaffold Ga0209336_10000116

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10000116
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38332
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (79.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047994	Metagenome	149	Y
F061371	Metagenome	132	Y
F069048	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000011623	F069048	GGA	MQIGDRIKVIDQEIYGKIIFDHGKEIVIEDEDAETNDNQLCFKKSEVEITNELA
Ga0209336_1000011626	F047994	N/A	MNDKIVDCINDEWDDMTRDLKDWLKSRKDDSIDSHIVYNKLTYLERVWKRERFDSYPDS
Ga0209336_1000011630	F061371	AGGA	MKTLTDIDTQIDAIKEVSSNALTKHGFSRSRQRIFDLSNELSNSWTNYKIIHGKTYYKELTLFVVTRSAKGLRYRSIIKRSGLHAVTVHDCLSQLIQDGLVLKKINNDRLIYRAKK