Scaffold Ga0209336

Basic Information
Taxon OID	3300025137 Open in IMG/M
Scaffold ID	Ga0209336_10000069 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025137 Open in IMG/M

Scaffold ID

Ga0209336_10000069 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	48874
Total Scaffold Genes	102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	81 (79.41%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

48874

Total Scaffold Genes

102 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

81 (79.41%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.2833

Long. (^o)

-134.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F011629	Metagenome / Metatranscriptome	289	N
F020898	Metagenome / Metatranscriptome	221	Y
F038656	Metagenome	165	N
F068717	Metagenome	124	N
F080162	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000006913	F080162	N/A	MRYRMLDDDIGNYLIIDTWANQILAKVTTIELAARTCQQLNKRLGTQKYLDELRQKVLTN
Ga0209336_1000006948	F011629	GAGG	MLNTTQVKELVKQRFGGSIKQVYLNKCYSNKQELADKRNMAFAVDGDVYKGVDLTALAQEIGCKRVKLHTAFLRGFADGCWLRLQHVNYNK
Ga0209336_1000006949	F003769	GGAGG	MQQLKTITVKTSTKQDSVHMETLYAVIQNCYNSLQVMEADCTSASYFINSANIFAQLQMLYCENETNDYVSIQSVMEVFANNITYYDERSLYEFVVENTAMQKVLLENYVYLSN
Ga0209336_1000006952	F020898	GAGG	MQKTKVSLNKSIANLTANILSNTANFVMQESTKNSCKSIYKNFKFNSTTKSKSGNETHFTAQMYNNYYCGRLCMLTFKNNAFVSMYTLD
Ga0209336_1000006966	F068717	AGGAGG	MHKEDIELKYEDYNRIIKAKSGHWDKTHKDALVQLQPYFDKGYLETNKEGDMWLTRKGVDVLLAVGCDPVKPQEFLTNYPHMLDQMR
Ga0209336_1000006969	F038656	GGAG	LDRKQNGRTLWIYGDSFAVDWKVDWGWQRQAAVMLDVDRVVNQACAGSSNEWSAMQLRNDEQKPGDIVVFFTTESTRQWFFEDRPYLSNLASITDTQDAKELEESEPEKYRAIMDYWLHLQRDDIDQLRMEHMIDSIRVQTIEGELRLIVIPSFISNMSFTDLIPVQGNMTFSVCDGEFANQNEMRLWYNQSIDTRANHMTQANHSVFARKLVVSLDEGKPLDLESGFDRGMLTHRDKLTHPGLCPQLIEMAKQPGNTIPK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209336_10000069

Overview

Ecosystem & Geography

Associated Families

Sequences