Scaffold Ga0209336_10000031

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10000031
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62176
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (74.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008340	Metagenome / Metatranscriptome	335	Y
F067642	Metagenome	125	Y
F084307	Metagenome / Metatranscriptome	112	Y
F095510	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000003110	F008340	GGA	MFIKHFVRMLTREELSDEDVIVYFDVVQSVVPTKLLTAYDEEKAKVGIEVMAYTSEDDDGDMFIYEIILQDEIDADEGDEISDELFEEFPDIKFTFEASVEV
Ga0209336_1000003124	F084307	AGGAG	MSTVQSLSNHLKHLEELHRELDEKITRHWEHHDSDDKIRQEKLEKLTLKREIELLKIRIKEMEDEG
Ga0209336_1000003130	F095510	AGGAGG	MSSEQMETQAKTKLAILVKSIEPIVEQQLSEFTPAEIEFVLANFRKHLKYDLTRDFEKNREKHLKESPFDAIINDDLGLNNG
Ga0209336_1000003132	F067642	GGAG	MEKPDPVEEAMKRICLDWPKKPYWIFTSPDQHKVYRQMRQDVCPELFKNAKGTPNKQLYSIGGVVVGKDEDYGNKENKAW