Scaffold Ga0209336_10000010

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10000010
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116265
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (16.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002332	Metagenome / Metatranscriptome	569	Y
F003038	Metagenome / Metatranscriptome	511	Y
F004953	Metagenome / Metatranscriptome	417	Y
F074771	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_10000010105	F003038	N/A	MGLSTTDLGNGGSTGLPKTIAPGNHTLKINDIKLEEYSFIPGAYHIVMNVETKPIDGFEGFFRDKNDESLGKYDGQIGRLKAGQYAFANGQTKSGIKIERDRSILIFLQNLSKSLGVNDWFVEQDNAHDTIEDFVNAFIETAPYKDKFLEFCVAGKEYMSKSGYVNYDLHLPKASKGKYAYGEVESGKVLFYDEKVHLRKLEVNNVSKFGDEDLSLSSSKNDDFKLD
Ga0209336_1000001036	F074771	N/A	MMSKFILRGNKVLLDKPEKKEKEEGKLDLIIPDSMEQDVEKEMMKEWTHLNVFAVGVEVTDVKVGDKVYVRTGALHNAEIIEIDGVIKMMVLIHDVVMVWQ
Ga0209336_1000001056	F002332	N/A	MALVNQVRKNVRLQKWDIVKYQILTYCYINKILLSNADLECLTLLSFNQPIELSNFCSDASVEDDSIFKSPQSVRNSLNKSEKYNLITRSSKNKKIIKLNPILKIQVEGSILLDYKFFAHESKKE
Ga0209336_1000001096	F004953	N/A	MNEDSKNTMMLVQSTWQDKQTFRMIPVSNDCPYVECILDPDSKVFVIISTTKKLTLHMLPKLDDYGQPLTGNKGQRQERHKMEVFQEFYVEDEAAIEDLIKLFAVNSSKFDWKSFMKKTAEAVEA