Scaffold Ga0209610_1138753

Overview

Basic Information

• Taxon OID: 3300025136
• Scaffold ID: Ga0209610_1138753
• Source Dataset Name: Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 795
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Lake Kivu
• Coordinates
  • Lat. (^o): -2.0288
  • Long. (^o): 29.1756
  • Depth (m): 220

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052414	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209610_11387532	F052414	N/A	IEAISAMLDGTLLTKHNRIRRLDGSIRTSPEHYTFQYRGADGKRMWKRIPRDAKAAVERLVRAGERYRALEREYAALLTELSLAHDRKKTPESATAPPDL