Scaffold Ga0208299_1081913

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1081913
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1130
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004849	Metagenome	421	Y
F035080	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_10819131	F004849	AGGAG	MTKQELKTKIGMGFFSCEWINNAGTISKIKRGILGQYAWRHTNNPIPTNVNEHNDYVLAYRVGNGLMPQHRRWANINPNTIIKLNGVETNA
Ga0208299_10819132	F035080	GGAG	MPKDKNDIVTINNVDISPLIREVVEYSKSKKSVGDLEDLISKVPMGKSPDWKLISGVLCNSIVEWSAKNRDNGGMELLQHIQSDVGYLLKRMGLTQ