Scaffold Ga0208299_1071075

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208299_1071075

Scaffold Ga0208299_1071075

Overview

Basic Information
Taxon OID	3300025133 Open in IMG/M
Scaffold ID	Ga0208299_1071075 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1250
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035332	Metagenome	172	Y
F036932	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_10710751	F035332	AGGA	MKMTLVVDTDDIKGIEASHKMISTLCRQYNARAESLHSEQRFSKIAFMKAIRSYMKQQMDAVESEDIKFEDMRSLRGAKQFADAIWGGWRP
Ga0208299_10710754	F036932	GGA	MKPMKLKTTPQFKRGDFVRVKEGVWDEEMPTNRMGHVQGFANGSRLYNDKGVTVQPTDQYYVYMTNGNTLKFHEMF

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