Scaffold Ga0208299_1062885

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1062885
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1365
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F019113	Metagenome	231	Y
F042854	Metagenome	157	Y
F062279	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_10628852	F062279	GGA	MYERMRGFLRRCVDVVVAIILLAAMGAYLLINSVIATQVINDLRLDTYVSYETGFGVVLLVLFLGWGPVWLMRSLDDNR
Ga0208299_10628854	F013357	GGAGG	MARARYIPGALVEARSSKYGKGFGIIVRGPTMDTKASGRYRDLENPQPWFVVHWFEKPGNVDSYYMRLGKGQVEMTQNQIKLLRKR
Ga0208299_10628855	F042854	N/A	MEITLKKLDRDLERYTRNRMRELRGETSTPWAEDPFIEAYTSRRIREMRVEHEMEQREIDLDNVALGGYTVATLEAYDGKS
Ga0208299_10628856	F019113	N/A	NDGAGNYGLGVVVKTESTGLIGEQAAHREPNTGWTEATEFDPDIPGKRYDVYFNKFEKTITFHGDYLEKA