Scaffold Ga0208299_1018144

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1018144
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3193
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005208	Metagenome	408	Y
F021116	Metagenome	220	Y
F051539	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_10181441	F021116	N/A	MKNLPHVQWTRIENRHGGGIPDLYGICDGVAIWLELKCIKQNSINISPLQISWNYNNFRHGGKNYYIVQDAQSRVIKLYDGDKGRELKRDG
Ga0208299_101814411	F051539	N/A	RKEVVTASLDNMTRPELEAKLKEIRDHNVINGEAIGVEIKEIEDITPQETEE
Ga0208299_10181449	F005208	AGGAG	MTLEELYWWRVERLWTMYNSITDDLVYKAMWERKLKELLLRGFRGE