Scaffold Ga0208299_1016621

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1016621
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3386
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F031648	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_10166214	F031648	AGGA	MVELNHNVVSFNADTTVKGGHGVVVAVFCTKKGGSGAKCILKNGTSGSGTTEFTIFGEIEGNYQDINRRFESGIFADITGSAEWTVVFK
Ga0208299_10166215	F001625	N/A	MALTISTSDWTNANVRKTLSFNAALVSKLRIYSIKVTFGASDNYASNGVSADLKEGRISTLVAVIPTFTDSLHKVEYDKANEKIKLFTVGGSAGAALAELANASNLTNSKVFEFLVIGF