NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208299_1016404

Scaffold Ga0208299_1016404


Overview

Basic Information
Taxon OID3300025133 Open in IMG/M
Scaffold IDGa0208299_1016404 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3411
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000747Metagenome / Metatranscriptome908Y
F000929Metagenome / Metatranscriptome830Y
F035335Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0208299_10164042F000747N/AMKKLLLALLLLLPLAGSARMFPTEFPIKAVCWNDVSEALEYHQEILGEYPIGKGWIDNKQGPSFGAIMYNPNKPSWTFLSFHKNEEGVIVCAITGGSVWEIIHLGEEEGKLQL
Ga0208299_10164043F000929AGGMSNGTQLNKSLSVGHIVATVGLIIGGFTFIYDLRESVAIQSFQLENVEDRLERVVARTDDQFGEIMDHLIRLEEKLDAMVLPSATYKRPR
Ga0208299_10164045F035335N/AMNIDAKFFGIIIFLVSQTAAGIWWAASLSSEVERLAGIQGTSIPSIEKAIEGLDVMGFRMDQLSKELEKINDRNDSIENQHSRLFDALQGNQIQQSTKGYSYD

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