Scaffold Ga0208299_1014317

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1014317
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3745
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F016324	Metagenome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_10143172	F016324	GGTGG	MHSSVRRPPLRAPKIGDIVKLSGPGSIGYAFKGAHGVGIVTKIDKPPDRRIEYEVKWLKSDERIRFNEEDLLVLSDVDR
Ga0208299_10143176	F014672	N/A	MSKFKPGDLVKIKDGTHQDGMPDHRVGMIVELGETSKSYTKAYTVVFLGTDVHLKFHEMFLEHFTSS
Ga0208299_10143177	F009562	AGGA	MVTIPLIRTETDAHVTPIERTALACEQMITAMMMQATLSDPTVSEAEREMFTTLSVATILPAEA