Scaffold Ga0208299_1010986

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1010986
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4485
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F053548	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_101098610	F010950	GGAG	MMNIWVVRQTCLYDNESYVSSHLTEKGALITAIKTVRSDVCDGIDEDEIDDYRPGLPHDPEEDLMQYDSKQLQGIVQDWWEYSWDINEQAQYQIYETQVEG
Ga0208299_101098611	F005547	AGGAG	MKVWVMQGSYEGEMFSSVHMTQKGCALACIADIIEFHGIDDDETALAVMHNSYAFTNTEKEHQEATEPIEWDQEKLKEMTSEQLWKIFSDWCEMSWDRMADRSYNLDANAVEIQA
Ga0208299_10109867	F053548	N/A	MKDSGAPSIGDLVVALYDEERDISCVGLVMETKGIECKILWSSESNPIGWWPRTSLKVVSPSGQPKFNALNNHLTT