Scaffold Ga0208299_1007169

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1007169
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6035
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F086310	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_100716910	F014672	N/A	MPKFSPGDLVRIKDNTHHAGMPDHRVGMIVEVGETSKSYTKTYTVIFLGTDIQLKFHEMFLEHFTSS
Ga0208299_100716911	F009562	AGGAG	MLTLPLIRTDDDSTLTPIERTAVACEQVITALLMAATMGDPRLAPTEREVLATLSVATIVPAEA
Ga0208299_10071692	F004771	GGA	MKVGDLVRMKTHNTGLVGIVMGRYPKYTDTGPIQIGIKWFGGSGKTEWEPASWLEVISAS
Ga0208299_10071693	F086310	GGAGG	VQVGDIVRHFLTEQIGIVLNIHNAQSSLASVHVIWTTQGDSLFGPGRKEWCSKNSLTVLTTA