Scaffold Ga0208299_1005973

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1005973
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6807
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020443	Metagenome	224	Y
F100973	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_10059733	F020443	GAGG	MKDLKVKLGFGKKEAAKTGKGIVVGGTGALAYSIISGMGYMPDAFSSEDVVPYVVAGLSAAINFIRQLIVDND
Ga0208299_10059734	F100973	GAGG	VNRINWQKLPRNPDGMSFSDTKKGWTQLWDQLEDCKKMKGMTNTVLRTTVDEKREARAEAKKAKGEVIALTKREHAKSKEKSLGAYSGVAATTLIISYQIVEVSGGWGKWEPVFQHEATIGVLQVIIGSILAFAMRPLQ