Scaffold Ga0208299_1004126

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1004126
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8785
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022282	Metagenome	215	Y
F022555	Metagenome	214	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N
F084854	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_100412614	F022555	AGGAG	MAITPKFKPGQLVRYSQGLHDLVGLVKSTQFARHRGDPVFVLVQWCGKYRQSEEYIPQSDLKLVETL
Ga0208299_10041262	F022282	GAG	MDNQFRYQLGDLVEFKQSQRMTEEYIDLVTLTGIVIEQRWVFTADNKFKVRTPDKDYWIREDHLTLLSSGTK
Ga0208299_10041264	F084854	GAGG	MLYTLKVIATIIVAFAGGIVFNRLLYKFFDWILSSIERVDE
Ga0208299_10041268	F059941	GGAGG	MKLGTLVRFAAYGAVMDTGYVSKYDEDPKFMWVECVKMGPQRVSKDSTMVEVVSEAG
Ga0208299_10041269	F063682	GGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAEHKTPLVLIKELNKSYWKVLKPDGGSVFIHKSHLTKRMY