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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025133 Open in IMG/M |
| Scaffold ID | Ga0208299_1001740 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15636 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029448 | Metagenome / Metatranscriptome | 188 | Y |
| F059988 | Metagenome / Metatranscriptome | 133 | Y |
| F067802 | Metagenome / Metatranscriptome | 125 | N |
| F080618 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208299_100174010 | F029448 | N/A | MAISVTEILGTDSLSGSRLVLNDNFNILTSEINAMEVYFNPTAGTITNLNDIKTESLRVGLSSILLDINASTFDILTNVDMTGNLNLNGGGLIRNDVDPQTLDDVFAAGLPINVGTSTAVPPYTSERCGNSTGAPVSILLNDGSIGQEIFFVYSQAQTGVISISGAVTPLVLPGGTNIELDAQGETVHLLCVDDGTGNGVWFLVGGAGYTIV |
| Ga0208299_10017406 | F067802 | N/A | MIKEIYSRDIDAPKYNDDVIEVTDQLQQLILKIENCLFTREGDVLGSPNMGCNLDDLVFSLVLNESVIAQRINSQIQTYCLNSSSSKFGVDTRVQFYSTVDRNGCLVDIYVNEERVIGAL |
| Ga0208299_10017408 | F059988 | AGGA | MNKFTERRTGMPSVYKATYEDGWHLKNLGNDYNENLMKNSFSSYMFRNERLATFIQVYLKPIMTYWINKVKYLRIYYNFGVPKDYQKIN |
| Ga0208299_10017409 | F080618 | N/A | MANNWQHLNFFDKNGKYYNFDYDTSADKWSGSIYLPEVSIGLFEVGQLFILQEFIDKNTNTKKFGFPHGIEVATGTTGSTDGICNWVAEWQTTDPTEIFLFQFNMNFNTGTQTSLEIEPDGPPLQVITELEIPLDSDPTETVNPLGYIITDQIQSEALQVNLAIRSETENTFKRTLLIKDDCTGNVIAEILIWGETIGEDERLRVMTQNMGYNVLESDSSVFRDTNIKEILPNFEEVNLKRKEIMLEGSNIYPWIGSYKGLVNAIKFFGYDTLKVKEFWKNVDANSPMFGKYIQSNNIDIFDPIVQLNDKSITLPNKRFRKTSLFSLVYRINKIIPDRYDIEDLPLTEENFDFTIEEILIKLFGLKKKLENEFLPLNARIKDITGEADFFGLLEVVNTISRNDKTEIVAGIDTSFKLSTDDCIYMEDLRSFSSFCLQSEAIVDEAIVSFCNAYIAPLSGNGIGRNLILGPWVTGEVYPPAPVGPDLNGPLGEPYDGNNVTVSGLADAFLAYFTRYAPNLHRVGAWPDGKSSYYLPDKPGIPVGALTILENDSFNNITWDNVNSTWDQLNSANNFFTFDIDPQGVSVGDIFTVTDPGTNTGATYTAVLGDTDTEVRDALYNQLVTLKASFTAPWTFFDISKENVVTGDVVRLFGQNVNNLVVACQSTVGSKLLFNQLPGETLFTWDGIERGNFEEIEWTVYKDATDVSPAYYKVFRGPLSQYNKLPLILPYVGLYSVEMKLYDLYNNISSNVKTDFICVESREVEYSGWYQARKSNYTWSSEGTYLWKDYGSLWNLPLEPKVTWDEETPGLYTSLNRVNAILNNFGLGSSPDFQLLNYQDDGKASFSGPYRWDNLTTGGWNDTYHLWWDMTSTTGDTPAFFQFKEVVPETYLKITDINGETAEHYFDTTTNTLAEAAAGLNASTNRIINKYVYNVVYDASSNEKFIQAVCRYFGVHGDWKYIDMVYADGDRVCPSTGITGAPFPTGATGCPSIIYRKGLSKASNPTWNTAKFINNGKTLPKMTWLMFVYDKCKIPGKAKPRWIIKNTTNSKMADIYFESKYLTYLFKESGKYEITLELTDTNGNKYKKGRNILVIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |