Scaffold Ga0208299_1000430

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1000430
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39115
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (61.84%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005934	Metagenome / Metatranscriptome	386	Y
F016207	Metagenome	249	Y
F042011	Metagenome	159	Y
F043079	Metagenome	157	N
F061354	Metagenome	132	Y
F079232	Metagenome	116	N
F083272	Metagenome / Metatranscriptome	113	N
F084740	Metagenome	112	N
F103919	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_100043012	F016207	N/A	MRYYILYPGNTETDTINAINQLGDDNGFGVFWANRGLNVLMNAVDQQHSITEELVIKCERGKSYSIEEFLDKIKLLKVRVQE
Ga0208299_100043037	F043079	AGAAG	MKNVLNYKGSSMSWKIVSKITDTYDFQDGAQNSYIVYVQDDAGVNIAAKEAYGIVDRTKVIKELINEYQDYGIVKIEHEDH
Ga0208299_100043044	F079232	GAG	MLKAKNQKPKTFMYGIEITKPWSKEMYAHNERTEEHLKDQILAAFQKTYVNMAIPMDEDNLRDMANEIAGYKYGEGFSLQDIIEEVLKELDYMPGFQLHETMYYLHHKGYVKTQAMGLIGYQPDPHLVPYWEVK
Ga0208299_100043046	F005934	N/A	MIDKKYYIDKGFELYAVMTSSDKYTQGIDILYPSTPIKSDNQPAVYILTDKSGKLLKIGETQNLTSRFYKAYRCISNTTNNRIRKFIKEQEDIWVYVLPLPIVTEKILGYKCGTSYVKGLEYHLLKEYKDRYQKVPPLNSILS
Ga0208299_100043049	F084740	N/A	MFRLTVHVTDVPRAEVRTGRKIKSANGKWIDEVKQKIHNVISYECRTRDEIAKRLGQIRSKYTIMKGIAGQHKVSKVDKEFIQISNIK
Ga0208299_100043055	F061354	AGG	MKVMLWITQTNLELLNQGEIIQYWLREPANALDVVQVQISYDEFIRLRDNQPEHYITRDHMRFINYAGTHDDYTIDMTDPYSEGHGVED
Ga0208299_100043061	F042011	GAG	MKKQQQYETSAKIAMVSLIGIVLSLTIYIGIGKHEPVQEARAQEPILWIPTIEDQSYMDSLYSMDAATKADMDSIRDMIDAILIKLD
Ga0208299_100043066	F103919	N/A	MEHLFGDPVGEIETIIDDMKNIVYIEGIGKCRVITINHPDETGINEPYDVYEPIEENK
Ga0208299_100043068	F083272	AGG	MKKSQIHKIIREEFVNILREQTLVTEAFQDPIARMLSKDRSLGNSWFNFFNAMSNSFDIAWDKVPKGAFQKVQPGSPLTKKGLAIYYIKGDVENPFATTDRYGYSSNKTLSGPAVLAATINNKITYAGGRGEDARVGGKSRRTEPVGKNVRGTMQVNKLKDIADVVYVFDLESYRGGTTALKSARAQLKLGKDKFTDHKAWKKANLDRYEDILRSRVGTRDQVDRMVAEIVKIANQAVTDAVSGTLKQDRYGDIMTTINGQEVMLKDVTQSMSSALEDYRRYIQYENDEDGAAKSDSYSGQYYSAKKKEYALELKRYLQGFKTGKIKRY