NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208299_1000430

Scaffold Ga0208299_1000430


Overview

Basic Information
Taxon OID3300025133 Open in IMG/M
Scaffold IDGa0208299_1000430 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39115
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (61.84%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005934Metagenome / Metatranscriptome386Y
F016207Metagenome249Y
F042011Metagenome159Y
F043079Metagenome157N
F061354Metagenome132Y
F079232Metagenome116N
F083272Metagenome / Metatranscriptome113N
F084740Metagenome112N
F103919Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208299_100043012F016207N/AMRYYILYPGNTETDTINAINQLGDDNGFGVFWANRGLNVLMNAVDQQHSITEELVIKCERGKSYSIEEFLDKIKLLKVRVQE
Ga0208299_100043037F043079AGAAGMKNVLNYKGSSMSWKIVSKITDTYDFQDGAQNSYIVYVQDDAGVNIAAKEAYGIVDRTKVIKELINEYQDYGIVKIEHEDH
Ga0208299_100043044F079232GAGMLKAKNQKPKTFMYGIEITKPWSKEMYAHNERTEEHLKDQILAAFQKTYVNMAIPMDEDNLRDMANEIAGYKYGEGFSLQDIIEEVLKELDYMPGFQLHETMYYLHHKGYVKTQAMGLIGYQPDPHLVPYWEVK
Ga0208299_100043046F005934N/AMIDKKYYIDKGFELYAVMTSSDKYTQGIDILYPSTPIKSDNQPAVYILTDKSGKLLKIGETQNLTSRFYKAYRCISNTTNNRIRKFIKEQEDIWVYVLPLPIVTEKILGYKCGTSYVKGLEYHLLKEYKDRYQKVPPLNSILS
Ga0208299_100043049F084740N/AMFRLTVHVTDVPRAEVRTGRKIKSANGKWIDEVKQKIHNVISYECRTRDEIAKRLGQIRSKYTIMKGIAGQHKVSKVDKEFIQISNIK
Ga0208299_100043055F061354AGGMKVMLWITQTNLELLNQGEIIQYWLREPANALDVVQVQISYDEFIRLRDNQPEHYITRDHMRFINYAGTHDDYTIDMTDPYSEGHGVED
Ga0208299_100043061F042011GAGMKKQQQYETSAKIAMVSLIGIVLSLTIYIGIGKHEPVQEARAQEPILWIPTIEDQSYMDSLYSMDAATKADMDSIRDMIDAILIKLD
Ga0208299_100043066F103919N/AMEHLFGDPVGEIETIIDDMKNIVYIEGIGKCRVITINHPDETGINEPYDVYEPIEENK
Ga0208299_100043068F083272AGGMKKSQIHKIIREEFVNILREQTLVTEAFQDPIARMLSKDRSLGNSWFNFFNAMSNSFDIAWDKVPKGAFQKVQPGSPLTKKGLAIYYIKGDVENPFATTDRYGYSSNKTLSGPAVLAATINNKITYAGGRGEDARVGGKSRRTEPVGKNVRGTMQVNKLKDIADVVYVFDLESYRGGTTALKSARAQLKLGKDKFTDHKAWKKANLDRYEDILRSRVGTRDQVDRMVAEIVKIANQAVTDAVSGTLKQDRYGDIMTTINGQEVMLKDVTQSMSSALEDYRRYIQYENDEDGAAKSDSYSGQYYSAKKKEYALELKRYLQGFKTGKIKRY

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