Basic Information | |
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Taxon OID | 3300025133 Open in IMG/M |
Scaffold ID | Ga0208299_1000430 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 39115 |
Total Scaffold Genes | 76 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (61.84%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Associated Families | 9 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 100 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005934 | Metagenome / Metatranscriptome | 386 | Y |
F016207 | Metagenome | 249 | Y |
F042011 | Metagenome | 159 | Y |
F043079 | Metagenome | 157 | N |
F061354 | Metagenome | 132 | Y |
F079232 | Metagenome | 116 | N |
F083272 | Metagenome / Metatranscriptome | 113 | N |
F084740 | Metagenome | 112 | N |
F103919 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208299_100043012 | F016207 | N/A | MRYYILYPGNTETDTINAINQLGDDNGFGVFWANRGLNVLMNAVDQQHSITEELVIKCERGKSYSIEEFLDKIKLLKVRVQE |
Ga0208299_100043037 | F043079 | AGAAG | MKNVLNYKGSSMSWKIVSKITDTYDFQDGAQNSYIVYVQDDAGVNIAAKEAYGIVDRTKVIKELINEYQDYGIVKIEHEDH |
Ga0208299_100043044 | F079232 | GAG | MLKAKNQKPKTFMYGIEITKPWSKEMYAHNERTEEHLKDQILAAFQKTYVNMAIPMDEDNLRDMANEIAGYKYGEGFSLQDIIEEVLKELDYMPGFQLHETMYYLHHKGYVKTQAMGLIGYQPDPHLVPYWEVK |
Ga0208299_100043046 | F005934 | N/A | MIDKKYYIDKGFELYAVMTSSDKYTQGIDILYPSTPIKSDNQPAVYILTDKSGKLLKIGETQNLTSRFYKAYRCISNTTNNRIRKFIKEQEDIWVYVLPLPIVTEKILGYKCGTSYVKGLEYHLLKEYKDRYQKVPPLNSILS |
Ga0208299_100043049 | F084740 | N/A | MFRLTVHVTDVPRAEVRTGRKIKSANGKWIDEVKQKIHNVISYECRTRDEIAKRLGQIRSKYTIMKGIAGQHKVSKVDKEFIQISNIK |
Ga0208299_100043055 | F061354 | AGG | MKVMLWITQTNLELLNQGEIIQYWLREPANALDVVQVQISYDEFIRLRDNQPEHYITRDHMRFINYAGTHDDYTIDMTDPYSEGHGVED |
Ga0208299_100043061 | F042011 | GAG | MKKQQQYETSAKIAMVSLIGIVLSLTIYIGIGKHEPVQEARAQEPILWIPTIEDQSYMDSLYSMDAATKADMDSIRDMIDAILIKLD |
Ga0208299_100043066 | F103919 | N/A | MEHLFGDPVGEIETIIDDMKNIVYIEGIGKCRVITINHPDETGINEPYDVYEPIEENK |
Ga0208299_100043068 | F083272 | AGG | MKKSQIHKIIREEFVNILREQTLVTEAFQDPIARMLSKDRSLGNSWFNFFNAMSNSFDIAWDKVPKGAFQKVQPGSPLTKKGLAIYYIKGDVENPFATTDRYGYSSNKTLSGPAVLAATINNKITYAGGRGEDARVGGKSRRTEPVGKNVRGTMQVNKLKDIADVVYVFDLESYRGGTTALKSARAQLKLGKDKFTDHKAWKKANLDRYEDILRSRVGTRDQVDRMVAEIVKIANQAVTDAVSGTLKQDRYGDIMTTINGQEVMLKDVTQSMSSALEDYRRYIQYENDEDGAAKSDSYSGQYYSAKKKEYALELKRYLQGFKTGKIKRY |
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