Scaffold Ga0208299_1000406

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1000406
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40355
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026885	Metagenome / Metatranscriptome	196	N
F028498	Metagenome / Metatranscriptome	191	N
F053982	Metagenome	140	N
F068777	Metagenome	124	N
F103078	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_100040619	F068777	N/A	MILDNSHSLEIVYDRPDSYFDKKEIEKKYGSLENWYAQNIRFISAHYNIASNTDITAREGREGVKRWAEMTPVDQIINNYRYFMGTQENFNFAYLTEDEKGGELPAPYVKGEQIFELMEYMRGGIRKIINSSKISVESLDPSKISKKLEKVRMIKLKKELSEFFNNTQEKFGMGFFPEGIGNDVDMDEAIDKVMKSPIDEMEEYGLDLINDIVNRNRLKDAMMKAFTDCAIGRYCGVYVDEMHGRPYTEVIPPYNLILDFGNDSDYNEKAEFVGWISFMTP
Ga0208299_100040624	F103078	N/A	MKEIAIIRPKSFSNIKQGVTLSATYNLRGKEYSLTQHGEVRSGNLQTNRGDLRFDGVRTQQSIEGKSYSEVEDRIEFWLSHPLIENLNGELKSTSKFSIEILEETKSKKRSKTVNVNKVISSVYGMTEAERRDVMYFFKQDPREMSDDDIKLVLVDIVEGILIGEPNSTRFIETFGSLSKSSVAERVEMMVYVNKGIATGFVTENADKFYIGDVLIGKDEDDIALFFKDNEQMYENLVRSLAEGGDETAYNEAHEEEATDEETPFAVKIKWEKLYKKYKLKGKFPADLDKAIDRINAHEKKNKLPVTK
Ga0208299_100040627	F028498	N/A	LKTKDCIELIQLADEGGVFTDESRYDIGTMTAVLNAARGFAIAEMYNKNNRIHPNFLQRVYPKYEKDLQQDDCYVMFEVPKTVEINNQIDGLMYVGTIDGKNSYWKVRTRMQANSRRNHRIHSIAMAKHVHFLHDTTRGYLEVYDDKVKYILVEGIFSDPTTIPGFNIEEDDYPITMNAMKRVEDMVRQGTIRDVLRVPINKISNSAEDSNIKRDVQTK
Ga0208299_100040628	F026885	N/A	MIEVGKYSIVSLQDAVESAKEMLRIQDTTEFDGFLLRKADEAMRHVGDLTTYVKRACTLSVADGRAKLPMGFIRLLGVRMSDSNGNCFDQPYLDLAFITDCGCDTTATNGNSYHDVFEVQDGYIVFHNPNDLSASEIKLAYLSRSVDDDGLMLMSERHERGVEAYLCYHFTLSFFEKFPVNIRQEYQRIWKNQKQHLKGMAQRERFEENKREIAAVLNAWITSDRNDR
Ga0208299_10004066	F053982	N/A	MKKQRMHYYGVIATYNPYDDTWYAFYRDDMSDYFTDRDKVDTGKGKDALSAMNDYLSKKITSAFS