Scaffold Ga0208299_1000034

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1000034
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 136531
• Total Scaffold Genes: 174
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 149 (85.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054844	Metagenome	139	Y
F058454	Metagenome	135	Y
F106169	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_1000034123	F058454	GAGG	MKVGDLVSYAFQASRERKGLSFDVGLVVETGKYTGNADVKVLWMGKGAPAPYPITQKSDHLRVINESR
Ga0208299_1000034129	F106169	N/A	MKVGDLICLCPVAHPEAIGVVTEILSRDQHGPLDVKVLSRGRIEFWEADEAEVISEGR
Ga0208299_1000034130	F054844	GGAGG	VKVGDLVTWRGSVGLVLGPCKKRWAHHGDVWVLWTNESKPKIESGDLLEVISASR