Scaffold Ga0209232_1140408

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1140408
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 780
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057678	Metagenome / Metatranscriptome	136	N
F061281	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_11404082	F061281	N/A	MNKFKKRVLKQFPKAYAELSSDGIRIINDDQFLAQEFYMPNTHCEDTAWEYASMACKLTQNFNRAHPSRMDLGDVENKLARINRRKRNGRRVK
Ga0209232_11404083	F057678	N/A	EIAVITNVRRHKNAITGYDIRSEKGSGYVIVQVDANLTTRQRNKRVEYPLIDSKLTAAWIGSDSETNLFAKENVGHTRQNFSKDMTLFLDGEAAGGVQHFERHNDLIFPTQGPRSF