Scaffold Ga0209232_1115803

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1115803
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 889
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y
F014969	Metagenome	258	N
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_11158032	F014969	AGGA	MISNYPFGKNTKSPDYYYTQNIYSDRGKGITGKMKKRKNKNVRIRKIKKTT
Ga0209232_11158033	F005656	AGGA	MKLKDLLEIQKIVEDRAIPYDVLEFDTVHFSKSKGYNVKILDLHLTHAIRILNNYLDDNIYPRYSDRQEINDSLRGIRDRVEDISEVVNKXPX
Ga0209232_11158034	F025411	GAG	MSITRIYRDRDNKIKVKKFSFEEVKKDLTKFFSHDNGINNRKDNNETKRFIRDTKNSXR
Ga0209232_11158035	F003531	N/A	ARELLKKHSYATVGKMLHRSKNSVIGQFYREKIMNGYTPDPFSKYTRKKEKDTYVNY