Scaffold Ga0209232_1097261

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1097261
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 998
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010571	Metagenome	302	Y
F038195	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10972611	F038195	GAGG	MRQDSKMKLHKDFYEYKTIPFTYFAKIKNRHDFRREWVTVRCQEDILKQQPQNVEIRRLKKNV
Ga0209232_10972612	F010571	GGAGG	MSMNTRQAIYIENLYEDFYEKHYEELSKTSDDVEWIEQESMRLAEIDLDNFEMEG
Ga0209232_10972614	F003976	GGAGG	MSRLYNDYYFEKQDILDTLEKLDMSVRLLNVWVNEPMGFENAKYLLEKNANQEFKWFSRDMVKELVEEEEL