NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1085473

Scaffold Ga0209232_1085473


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1085473 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1085
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041145Metagenome160N
F059445Metagenome134Y
F098210Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209232_10854731F041145N/AETEPTPKQLLKMSGEKNANITDLFTPEMCDAQFYLQEVKEREYDSYSIVDIMRACNVMWRWRLKVKKEGWPDMSSIEYRCGELLKKSQKIQAIKDYRAYMEKMNNDCSLRQAKEWVDKLAIKMDLD
Ga0209232_10854732F059445AGGAGMNLNELVDSLIELSCHEMPEEARKSLDDAIDHIVSNMNDNQLKDVLGKTIIDDIESRHPKHVWKEEGDEEEIKALKSLMEGNIAIA
Ga0209232_10854733F098210GGALRLPNKITIGRENWVRMMYCMKHLMKLHPEYYDMIKPFYDQMYDKYPYNENDPFNFEDNYKVRPRTSIERELDKLADLNNKEKDNPHDAWIHSEDQHMDEQEFQSGLNQLIWDLGMRLPSWDDNKDKG

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