Scaffold Ga0209232_1030728

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1030728
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2057
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046318	Metagenome	151	Y
F087055	Metagenome	110	Y
F097142	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10307282	F046318	AGGAG	MKYKQRFKNMPIDSSWFNEEDREQFIKELSDLAFGENTIERGYSMEEVIERLKIFSEFSLKWEEHSGEESC
Ga0209232_10307284	F097142	N/A	MNESNLRLSDVQTKAIESLAKADARPVEQMLQMVLHEGFEWIFNEVCEINTPYLGWPEEYAEISKELEKEYKKAMDVK
Ga0209232_10307286	F087055	N/A	MKSYIKFIMYHTLTVSAAYGRDFKSKKEILNYWNENRDFQNLGINSNNAYVNKKDANRFKVGFLNVRYKNLMNIAVIDVTKDSIK