Scaffold Ga0209232_1028237

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1028237
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2159
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F009959	Metagenome / Metatranscriptome	310	Y
F041211	Metagenome / Metatranscriptome	160	Y
F077194	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_102823710	F041211	N/A	MNNLNTTIDKVAMSEFDMHYYQLGDNEKQWCHDELTNNPKWLAPFWKQEDYQSEVDSWGY
Ga0209232_102823711	F001740	N/A	MYNINNPSNWSWSKAFDEMAKTVNQAELTQQSINHVLDYPGEANGLYMTLSKNQQDDVYEILNQIL
Ga0209232_10282373	F009959	N/A	MTEQEVIEKICDRLVTTLYNELDYYMFEELGYTETDDKYVEDADKLITKVINTLIK
Ga0209232_10282379	F077194	N/A	MKTKQYPNQTLTVLDFGSGEIHQYHDVDYEKYQMELDEFVGVQLGYNLNEVEYMFHTDSSIYDLTNEL