Scaffold Ga0209232_1026210

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1026210
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2258
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F004856	Metagenome / Metatranscriptome	421	Y
F010532	Metagenome	302	N
F020816	Metagenome / Metatranscriptome	222	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10262101	F020816	N/A	TTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDE
Ga0209232_10262102	F004856	GGAGG	MSDWIEGTKPKIIEARYSAYLSWDLEELGIDWDDIEDWDLSRADLEITFKDGTKKTYENWQDLDIDYKHNFEEVLILDENWDRVEGLN
Ga0209232_10262105	F010532	GAGG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEVDIIHRIEEHLSYMVSSYLNKSYEGISVD
Ga0209232_10262108	F003051	GAGG	MKTKILKSKVVIDMSVSEYDTLFKYINKIDSMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGSK