Scaffold Ga0209232_1023037

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1023037
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2434
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024420	Metagenome	206	N
F031295	Metagenome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10230374	F031295	GAGG	MVRAEEKLFNVISALTDEYNNYPHKRLKKSEVQDLVHDLEIVDAELHDLKLPPITDDIQLDNRVCMFYVINQLKDMVTEKDDEQKIIQLTEFYNQLVFNLGINTFRNHENDWEDR
Ga0209232_10230376	F024420	GGAGG	MTIYEELRKIIERNSCWQQEGRKFELLWNLLLSSDKRSFSEYFEEEHNIKLYDAMTFKEILTLCRDYNVGGRFKXVD