NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1021052

Scaffold Ga0209232_1021052


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1021052 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2562
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F013536Metagenome / Metatranscriptome270Y
F094392Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209232_10210522F013536N/AMNKIKFLKNNYIQLNKTTYKPYTVCELSDTKFGLVDNFGYSYITDWFNYKGFTYVAV
Ga0209232_10210523F094392GAGMKEIDNMLEQWIKNSIIRAKFRKIIVKEINKYKQNTNAIG
Ga0209232_10210525F000126N/AMPRDFSITRKEGELYHAKVTDSYGNKYDNYFEEAHEANDWIYYVWSKEDWFNSANSQELLNNAIAECVKMDEERGKEPLLD

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