Scaffold Ga0209232_1020600

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1020600
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2594
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F057352	Metagenome	136	Y
F067640	Metagenome	125	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_102060010	F057352	GAGG	MKLWVLHGTYEGESFSSVHLTEKGCALACIADVLEFLGVDNEEEALSVMNDSYAYTETDGEQTEAFEWDQEKMKNMSSKDLWKIFSDWTEMCWDRMSDRSYYIDAEPKMVQA
Ga0209232_102060011	F067640	AGGAGG	MIEVGSLLRHRFNDSLWLALDEIAESVLIINQKTNFKMWAEKTHFEVIG
Ga0209232_10206007	F079212	GAGG	VDENQKELIDRCIESHYNMIRYHRRAIVELSRKMLKEPKICMECFDIEIKNESR
Ga0209232_10206009	F010950	N/A	MMNIWVVRQTCLYDNESYVTSHLTEKGALITAIKTVREDLCDGFDEDELEDMRPDLPHNHEEDLMQYNSEQLRGIVQDWWEYSWDINEQAQYQIYETQVEA