Scaffold Ga0209232_1017887

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1017887
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2818
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030729	Metagenome	184	Y
F032243	Metagenome	180	Y
F034754	Metagenome	174	Y
F092880	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10178874	F034754	GAGG	MKVGDLVDINQERGSGIYKDVIPRGLGVVVCFEELEDLHYPNIGSFNLGPIVHVLLNTGETEGFAPQSLEVVCESRR
Ga0209232_10178876	F092880	GAGG	MKPGDLVQYNSRLLLVLRPNPDEYGYNDGWWQCMEVGTNRVRIYSPTQLTVIKTEAQFYL
Ga0209232_10178878	F030729	AGGAG	MKVTKKKIEAILQKDERMKFISLWYDRSAKQWIFTGGDSVMWSSSGTGIFRLDMLSVEEWVDYAYHLAGRKRYV
Ga0209232_10178879	F032243	GGAGG	MSSNYEMYGAEEGWEHPDVGDLVEIASKSSLKTEVGVVVEPNEYIKNDHLWAQVLLNNGKMKILPKRELTVIQRGEG