Scaffold Ga0209232_1015838

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1015838
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3022
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F059941	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10158383	F006383	GGAGG	MHDKMWAVQQPGTLLRGRSSHHYGRLALVLEEAYAGPTPSNGYPPRKYVKMQWVATGERFEEMLVNAHNCFDIVSSCDTLGTKEDV
Ga0209232_10158384	F021674	GGAG	MERETYNTRLKSNPKDIPLGSLLRCKKHCRKNVTIRQNGEYGILALSDNGKYITHDVLFPNGTRCIYMPLNWEVVSYAR
Ga0209232_10158385	F015346	GAGG	MEHKLYNIGDLVAVASNRVLGIITKSNYWALDEYLGGEIEMVDVMFGSHESKQYPVQYLVEL
Ga0209232_10158386	F059941	GAGG	VKLGTLVQFAAYGAVMDTGYVSSHDEDPEFMWVECVKMGPQRVRKDHTLLEVLSEAG
Ga0209232_10158388	F006867	AGGAG	MLYGKELAQSIQKRCKIQPGMLIKSTAGTTVSKIALVVGLSPGCKFDRDYEGAEEHIFYKCQPFDGTPDFVDYVCNMEQVS