Scaffold Ga0209232_1014604

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1014604
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3159
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10146043	F018906	AGGAG	LKTCKVNPLKLNETRFEATAHKGGRYVKRYYFSNGLGASVACHSGTYGGNAGYFEVAILKYPLGTDPEITSEIIYDQPINEHLGCVDVIGWRDFFEVADILQQIRNYNTGEYAINE
Ga0209232_10146044	F012114	AGGAG	MSYNHCIMPEVRNNVWVVYDLDGKKIGEVGAMSETEARQKVAQHVMIPFRLSHIEE
Ga0209232_10146046	F019646	AGG	MSNNNFCIEYRTDCCGAYVENDAQICPDCYEHCEVIEDRVDYDGGDDVHFQASLDFYGAG