Scaffold Ga0209232_1012575

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1012575
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3458
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035330	Metagenome / Metatranscriptome	172	Y
F067815	Metagenome	125	Y
F094526	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10125752	F094526	GGA	MAECKKYFRQKKGQWIYIWDNETRRNKKVCLQDLLDRINHTLRHENKIYFATTYDRDIYKVEGCIMEYKNMN
Ga0209232_10125754	F067815	AGGAGG	MENTHSTFLVLKIRETKSNGETDISVDSSFDSFTDAKNYKEAKDCIERLTPFEHWTVSYKIQQIFYKSFVQTEKKSWKDLISV
Ga0209232_10125755	F035330	AGGA	MLNKGTKFFVTWTPHYINGEENFHGQSISRKGTWDAKSKIGINKKTGKKYMTFWDRDRERYTTANSDIVSITFNIFQKGAK