Scaffold Ga0209232_1011902

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1011902
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3567
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F024421	Metagenome	206	Y
F059351	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_101190210	F002594	N/A	MAKIPTTRLNSAPVVYNQNEFNQLVEDLQDIIKILNTTYPKDQSDERERQVWFLGG
Ga0209232_10119026	F059351	AGGA	MTQKIKVTAELEIENDMAIDDLTLDTSLGLIGTIKSYDVKYEEKKDEEPKPKLTYDQVKEKYFFKDLNIDTIRTQTISAFMTQESDKFHDFAVEAIDDAALKVNFVEIPEQDQQLVTEILNDEFYSEVLAKKDLKEKHGIE
Ga0209232_10119029	F024421	GGAGG	MENTLISKLNHKQNLEAQWASKLLANGTVTVSMVKISKEIKDVEREIIEVTEQKKD